VMD/NAMD
| Excellent open source molecular visualization/molecular dynamics software
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MMTK
| The Molecular Modelling Toolkit: an open source library for molecular simulation applications
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PyMOL
| An open source Python-enhanced molecular graphics program
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The Protein Data Bank
| The principal public repository for structural models of biological macromolecules
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Archived NanoCAD mailing list
| An archived mailing list from 1995 to 2001 that contains interesting discussions about the development of
molecular modeling software, though mainly focused around nanotechnology
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Archived MMTK mailing list
| An archived mailing list from 1997 to 2004 for the Molecular Modeling Toolkit
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Archived VMD mailing list
| An archived mailing list from 1997 to 2004 for the Visual Molecular Dynamics program
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Archived NAMD mailing list
| An archived mailing list from 2003 to 2004 for the NAMD Molecular Dynamics program
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